Variant report

Variant	rs73402077
Chromosome Location	chr15:53372898-53372899
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs73400035	1.00[AFR][1000 genomes]
rs73400047	1.00[AFR][1000 genomes]
rs73400102	1.00[AFR][1000 genomes]
rs73402010	1.00[AFR][1000 genomes]
rs73402062	1.00[AFR][1000 genomes]
rs73402065	1.00[AFR][1000 genomes]
rs8026698	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833007	chr15:53264564-53453525	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv904221	chr15:53279378-53434365	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3343986	chr15:53284440-53571936	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv904222	chr15:53316487-53384700	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1037630	chr15:53324645-53708925	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1050535	chr15:53352572-53472957	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1036751	chr15:53354285-53398679	Enhancers Weak transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1039762	chr15:53354285-53414479	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53372000-53373200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr15:53372000-53373400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:53372000-53373600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr15:53372200-53373200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr15:53372200-53373400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr15:53372400-53373400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr15:53372600-53373400	Enhancers	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links