Variant report

Variant	rs73404353
Chromosome Location	chr9:13098231-13098232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs7044949	1.00[EUR][1000 genomes]
rs71306704	1.00[AMR][1000 genomes]
rs73404357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404372	1.00[AMR][1000 genomes]
rs73404374	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404380	1.00[AMR][1000 genomes]
rs73404385	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404389	1.00[AMR][1000 genomes]
rs7867086	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422212	chr9:12448789-13127738	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv917331	chr9:12941193-13146852	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv892579	chr9:12954161-13120380	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv892580	chr9:13065680-13115422	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv892581	chr9:13085379-13120380	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv892582	chr9:13085379-13147764	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13084800-13103400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:13089400-13102200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr9:13089400-13104200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:13089400-13104400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr9:13091000-13104200	Weak transcription	Fetal Lung	lung
6	chr9:13091600-13104800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:13091800-13104400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:13091800-13121600	Weak transcription	Brain Angular Gyrus	brain
9	chr9:13092000-13104200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:13093400-13106800	Weak transcription	Ovary	ovary
11	chr9:13094200-13109800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:13094400-13104000	Weak transcription	Left Ventricle	heart
13	chr9:13094600-13104400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:13094800-13102800	Weak transcription	Fetal Muscle Leg	muscle
15	chr9:13094800-13104000	Weak transcription	Brain Substantia Nigra	brain
16	chr9:13096600-13102000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:13096600-13109600	Weak transcription	Brain Germinal Matrix	brain
18	chr9:13096800-13102400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr9:13097000-13107000	Weak transcription	A549	lung
20	chr9:13097400-13106800	Weak transcription	Psoas Muscle	Psoas
21	chr9:13097800-13139400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr9:13098200-13104800	Weak transcription	HSMM	muscle

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