Variant report

Variant	rs7867086
Chromosome Location	chr9:13110608-13110609
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs71306704	1.00[AMR][1000 genomes]
rs73404353	1.00[AMR][1000 genomes]
rs73404357	1.00[AMR][1000 genomes]
rs73404358	1.00[AMR][1000 genomes]
rs73404363	1.00[AMR][1000 genomes]
rs73404366	1.00[AMR][1000 genomes]
rs73404372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404374	1.00[AMR][1000 genomes]
rs73404380	1.00[AMR][1000 genomes]
rs73404385	1.00[AMR][1000 genomes]
rs73404389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422212	chr9:12448789-13127738	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv917331	chr9:12941193-13146852	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv892579	chr9:12954161-13120380	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv892580	chr9:13065680-13115422	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv892581	chr9:13085379-13120380	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv892582	chr9:13085379-13147764	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13091800-13121600	Weak transcription	Brain Angular Gyrus	brain
2	chr9:13097800-13139400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:13101600-13120400	Weak transcription	Fetal Kidney	kidney
4	chr9:13101600-13141600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr9:13102000-13115400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:13102200-13122600	Weak transcription	Fetal Intestine Small	intestine
7	chr9:13102400-13111200	Weak transcription	Fetal Stomach	stomach
8	chr9:13102800-13121400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:13103000-13111200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr9:13103000-13118800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr9:13103000-13119400	Weak transcription	Right Ventricle	heart
12	chr9:13103200-13113600	Weak transcription	Fetal Brain Female	brain
13	chr9:13103200-13134600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:13103200-13137200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr9:13103200-13143400	Weak transcription	Pancreas	Pancrea
16	chr9:13103200-13163400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr9:13103200-13175600	Weak transcription	HepG2	liver
18	chr9:13103400-13116800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr9:13103400-13134600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:13103600-13113000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr9:13103800-13139400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr9:13104000-13112000	Weak transcription	Gastric	stomach
23	chr9:13104000-13113200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:13104200-13113200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:13104400-13113800	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr9:13104400-13137200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:13104600-13114000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr9:13104600-13114200	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr9:13104800-13113200	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr9:13105200-13114200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr9:13105400-13110800	Weak transcription	Fetal Brain Male	brain
32	chr9:13105400-13111200	Strong transcription	NH-A	brain
33	chr9:13105400-13124800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr9:13105600-13134800	Weak transcription	Lung	lung
35	chr9:13105600-13144600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr9:13106000-13153400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr9:13106200-13111000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr9:13106600-13111000	Strong transcription	Fetal Intestine Large	intestine
39	chr9:13106600-13116200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr9:13106600-13139200	Weak transcription	NHEK	skin
41	chr9:13107400-13112000	Weak transcription	Psoas Muscle	Psoas
42	chr9:13107400-13121000	Weak transcription	Aorta	Aorta
43	chr9:13107600-13124800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr9:13108200-13121000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr9:13108400-13111200	Strong transcription	Osteobl	bone
46	chr9:13108400-13112600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr9:13108400-13113400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr9:13108400-13118600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr9:13108600-13110800	Strong transcription	Ovary	ovary
50	chr9:13108600-13111200	Strong transcription	Skeletal Muscle Male	skeletal muscle

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