Variant report

Variant	rs73404853
Chromosome Location	chr18:24664596-24664597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12326427	1.00[AMR][1000 genomes]
rs13381460	1.00[AMR][1000 genomes]
rs4800276	0.85[AFR][1000 genomes]
rs56044850	0.85[AFR][1000 genomes]
rs58523134	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59245285	1.00[AMR][1000 genomes]
rs66678826	0.86[AFR][1000 genomes]
rs7237325	0.85[AFR][1000 genomes]
rs73404841	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404844	1.00[AMR][1000 genomes]
rs73404849	0.81[AFR][1000 genomes]
rs73404856	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404857	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404899	1.00[AMR][1000 genomes]
rs73404900	1.00[AMR][1000 genomes]
rs73406619	1.00[AMR][1000 genomes]
rs73406623	1.00[AMR][1000 genomes]
rs73406636	1.00[AMR][1000 genomes]
rs73406649	1.00[AMR][1000 genomes]
rs73406691	1.00[AMR][1000 genomes]
rs8093303	0.85[AFR][1000 genomes]
rs8094414	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833600	chr18:24473894-24681019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1067103	chr18:24524011-24760469	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv543668	chr18:24524011-24760469	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv909473	chr18:24655235-24792075	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24651200-24667600	Weak transcription	Pancreas	Pancrea
2	chr18:24664200-24667200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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