Variant report

Variant	rs73406691
Chromosome Location	chr18:24792050-24792051
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12326427	1.00[AMR][1000 genomes]
rs13381460	1.00[AMR][1000 genomes]
rs16943382	1.00[EUR][1000 genomes]
rs16943391	1.00[EUR][1000 genomes]
rs16943406	1.00[EUR][1000 genomes]
rs1811332	1.00[EUR][1000 genomes]
rs36109775	1.00[EUR][1000 genomes]
rs56798912	1.00[EUR][1000 genomes]
rs58523134	1.00[AMR][1000 genomes]
rs59245285	1.00[AMR][1000 genomes]
rs7232065	1.00[EUR][1000 genomes]
rs73404841	1.00[AMR][1000 genomes]
rs73404844	1.00[AMR][1000 genomes]
rs73404853	1.00[AMR][1000 genomes]
rs73404856	1.00[AMR][1000 genomes]
rs73404857	1.00[AMR][1000 genomes]
rs73404899	1.00[AMR][1000 genomes]
rs73404900	1.00[AMR][1000 genomes]
rs73406619	1.00[AMR][1000 genomes]
rs73406623	1.00[AMR][1000 genomes]
rs73406636	1.00[AMR][1000 genomes]
rs73406649	1.00[AMR][1000 genomes]
rs73406683	1.00[EUR][1000 genomes]
rs73406685	1.00[EUR][1000 genomes]
rs73408404	1.00[EUR][1000 genomes]
rs73408417	1.00[EUR][1000 genomes]
rs73408431	1.00[EUR][1000 genomes]
rs8094414	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909473	chr18:24655235-24792075	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv909474	chr18:24683823-24832023	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv530515	chr18:24704459-24883897	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv518698	chr18:24779601-24793163	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3354552	chr18:24789654-24793852	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv2443116	chr18:24791159-24792709	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24788000-24793000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr18:24791400-24793000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr18:24791800-24793200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr18:24792000-24792200	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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