Variant report

Variant	rs7232065
Chromosome Location	chr18:24811859-24811860
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16943382	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16943391	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16943400	0.95[AMR][1000 genomes]
rs16943406	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1811332	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36109775	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56798912	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73406683	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73406685	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73406691	1.00[EUR][1000 genomes]
rs73408404	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408406	0.97[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73408417	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73408426	0.95[AMR][1000 genomes]
rs73408431	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408436	0.95[AMR][1000 genomes]
rs8086352	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909474	chr18:24683823-24832023	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv530515	chr18:24704459-24883897	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3370751	chr18:24809654-24813952	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24810400-24813000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr18:24811000-24812000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr18:24811000-24812000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr18:24811000-24812800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr18:24811000-24813400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr18:24811000-24814000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr18:24811200-24812000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr18:24811200-24812000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr18:24811200-24812000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr18:24811200-24813400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr18:24811200-24813600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr18:24811800-24822400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links