Variant report

Variant	rs16943400
Chromosome Location	chr18:24832104-24832105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16943382	0.97[AMR][1000 genomes]
rs16943391	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16943406	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16943440	0.81[AMR][1000 genomes]
rs1811332	0.92[AMR][1000 genomes]
rs7232065	0.95[AMR][1000 genomes]
rs73408404	0.95[AMR][1000 genomes]
rs73408406	0.97[AMR][1000 genomes]
rs73408417	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73408426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73408431	0.95[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73408436	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs8086352	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530515	chr18:24704459-24883897	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24831600-24833600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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