Variant report

Variant	rs73408404
Chromosome Location	chr18:24803951-24803952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr18:24803449-24804384	HEK293	kidney:	n/a	n/a
2	KAP1	chr18:24803727-24804309	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000265374	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16943382	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16943391	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16943400	0.95[AMR][1000 genomes]
rs16943406	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1811332	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36109775	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56798912	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7232065	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73406683	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73406685	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73406691	1.00[EUR][1000 genomes]
rs73408406	0.97[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73408417	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73408426	0.95[AMR][1000 genomes]
rs73408431	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408436	0.95[AMR][1000 genomes]
rs8086352	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909474	chr18:24683823-24832023	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv530515	chr18:24704459-24883897	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24803200-24804400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr18:24803200-24804800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr18:24803400-24804000	Enhancers	H9 Cell Line	embryonic stem cell
4	chr18:24803400-24804200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr18:24803400-24804200	Enhancers	Esophagus	oesophagus
6	chr18:24803400-24804400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr18:24803400-24804400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr18:24803400-24804400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr18:24803400-24804400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr18:24803400-24804600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr18:24803400-24804600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr18:24803400-24804800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr18:24803400-24805000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr18:24803400-24808000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr18:24803600-24804200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr18:24803600-24804200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr18:24803600-24804400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr18:24803600-24804800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr18:24803600-24804800	Enhancers	HMEC	breast
20	chr18:24803800-24804200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr18:24803800-24804400	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr18:24803800-24804400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr18:24803800-24804600	Enhancers	NHEK	skin
24	chr18:24803800-24804800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr18:24803800-24804800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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