Variant report

Variant	rs8086352
Chromosome Location	chr18:24795316-24795317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16943382	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16943400	0.84[AMR][1000 genomes]
rs1811332	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36109775	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56798912	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7232065	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73406683	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73406685	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73408404	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73408406	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73408417	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73408426	0.84[AMR][1000 genomes]
rs73408436	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909474	chr18:24683823-24832023	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv530515	chr18:24704459-24883897	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24793200-24803400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:24793400-24795800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr18:24794200-24795600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr18:24794400-24795600	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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