Variant report

Variant	rs73406683
Chromosome Location	chr18:24782912-24782913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16943382	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16943391	1.00[EUR][1000 genomes]
rs16943406	1.00[EUR][1000 genomes]
rs1811332	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36109775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56798912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7232065	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73406685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73406691	1.00[EUR][1000 genomes]
rs73408404	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73408406	0.92[ASN][1000 genomes]
rs73408417	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73408431	1.00[EUR][1000 genomes]
rs8086352	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909473	chr18:24655235-24792075	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv909474	chr18:24683823-24832023	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv530515	chr18:24704459-24883897	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv518698	chr18:24779601-24793163	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24776800-24786400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr18:24779200-24785600	Weak transcription	Fetal Intestine Large	intestine
3	chr18:24779200-24785600	Weak transcription	Fetal Intestine Small	intestine
4	chr18:24782600-24783200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr18:24782600-24783200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr18:24782600-24783200	Enhancers	NHEK	skin
7	chr18:24782600-24783400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr18:24782600-24783400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr18:24782600-24783400	Enhancers	HMEC	breast
10	chr18:24782600-24783600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr18:24782800-24783200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr18:24782800-24783200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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