Variant report

Variant	rs73406930
Chromosome Location	chr18:28742601-28742602
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DSG1-2	chr18:28742498-28742752	ENSG00000265888.1

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56143587	0.87[AFR][1000 genomes]
rs6506888	0.91[AFR][1000 genomes]
rs73952876	1.00[AMR][1000 genomes]
rs8093017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9944812	0.86[AFR][1000 genomes]
rs9948830	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530788	chr18:28596461-28751891	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv132191	chr18:28739028-28745912	Active TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv131242	chr18:28739028-28748058	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28737400-28746400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr18:28741400-28742800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
3	chr18:28741400-28743200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr18:28741400-28743200	Flanking Active TSS	Primary T cells from cord blood	blood
5	chr18:28741400-28743200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
6	chr18:28742000-28742800	Active TSS	Primary T helper cells fromperipheralblood	blood
7	chr18:28742000-28743000	Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr18:28742000-28743000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr18:28742200-28742800	Active TSS	Primary T cells fromperipheralblood	blood
10	chr18:28742200-28742800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr18:28742200-28743000	Flanking Active TSS	NHEK	skin
12	chr18:28742200-28743400	Enhancers	Placenta Amnion	Placenta Amnion
13	chr18:28742400-28742800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr18:28742400-28742800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr18:28742400-28742800	Enhancers	Left Ventricle	heart
16	chr18:28742400-28743200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr18:28742400-28743200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr18:28742600-28742800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr18:28742600-28742800	Flanking Active TSS	HMEC	breast
20	chr18:28742600-28743200	Enhancers	Esophagus	oesophagus
21	chr18:28742600-28743600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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