Variant report

Variant	rs73952876
Chromosome Location	chr18:28771537-28771538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73406930	1.00[AMR][1000 genomes]
rs8093017	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3317366	chr18:28771236-28776023	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3317367	chr18:28771244-28776059	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3317368	chr18:28771329-28775927	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv20999	chr18:28771340-28775873	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28769200-28773200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr18:28770400-28771600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr18:28770400-28773400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr18:28770600-28772600	Enhancers	HMEC	breast
5	chr18:28770600-28773200	Enhancers	NHEK	skin
6	chr18:28770800-28773600	Enhancers	Placenta Amnion	Placenta Amnion
7	chr18:28771000-28789000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr18:28771200-28772800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr18:28771200-28778800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr18:28771400-28771800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr18:28771400-28772400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr18:28771400-28772800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr18:28771400-28773000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr18:28771400-28783000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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