Variant report

Variant	rs73407232
Chromosome Location	chr15:42007275-42007276
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42005381..42008216-chr15:42025990..42028220,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174197	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs61067744	1.00[AMR][1000 genomes]
rs61280123	0.93[AFR][1000 genomes]
rs73407212	1.00[AMR][1000 genomes]
rs73407216	1.00[AMR][1000 genomes]
rs73407235	1.00[AMR][1000 genomes]
rs73407239	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73407262	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408954	1.00[AMR][1000 genomes]
rs73408959	1.00[AMR][1000 genomes]
rs73408960	1.00[AMR][1000 genomes]
rs73408963	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049514	chr15:41958482-42081210	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1048655	chr15:41978391-42049360	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
4	nsv1036086	chr15:42004962-42091451	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41972400-42065200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:41984200-42034800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:41989000-42041600	Weak transcription	Fetal Brain Male	brain
4	chr15:41989200-42009400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:41995400-42023800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:41996200-42034800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:41997400-42008400	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr15:41997400-42008800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr15:41998000-42008400	Weak transcription	NHLF	lung
10	chr15:41999000-42008200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:41999200-42008200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:41999800-42018400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr15:42002000-42021400	Weak transcription	Esophagus	oesophagus
14	chr15:42002200-42028400	Weak transcription	Pancreas	Pancrea
15	chr15:42002600-42015600	Weak transcription	Psoas Muscle	Psoas
16	chr15:42003600-42021800	Weak transcription	Lung	lung
17	chr15:42003600-42026800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr15:42003600-42027000	Weak transcription	Brain Germinal Matrix	brain
19	chr15:42003600-42028400	Weak transcription	Aorta	Aorta
20	chr15:42003800-42021400	Weak transcription	Fetal Kidney	kidney
21	chr15:42003800-42027200	Weak transcription	Spleen	Spleen
22	chr15:42003800-42028400	Weak transcription	Gastric	stomach
23	chr15:42003800-42028400	Weak transcription	Small Intestine	intestine
24	chr15:42003800-42056000	Weak transcription	Colonic Mucosa	Colon
25	chr15:42004000-42020200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr15:42004000-42021200	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr15:42004000-42021400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr15:42004000-42026800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr15:42004000-42027000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr15:42004200-42012600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr15:42004200-42021400	Weak transcription	Left Ventricle	heart
32	chr15:42004600-42020200	Weak transcription	Fetal Stomach	stomach
33	chr15:42004600-42026600	Weak transcription	Right Ventricle	heart
34	chr15:42004800-42021400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr15:42005000-42011600	Weak transcription	Fetal Intestine Small	intestine
36	chr15:42005400-42019200	Weak transcription	HSMMtube	muscle
37	chr15:42005400-42027000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr15:42005400-42028400	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr15:42005600-42011800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr15:42005600-42018600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:42005600-42021200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr15:42005600-42027200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr15:42005600-42027400	Weak transcription	NHDF-Ad	bronchial
44	chr15:42005800-42018200	Weak transcription	K562	blood
45	chr15:42005800-42020800	Weak transcription	Stomach Smooth Muscle	stomach
46	chr15:42005800-42020800	Weak transcription	HUVEC	blood vessel
47	chr15:42005800-42022600	Weak transcription	Brain Angular Gyrus	brain
48	chr15:42005800-42027000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr15:42005800-42028400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr15:42006000-42007800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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