Variant report

Variant	rs61280123
Chromosome Location	chr15:42043654-42043655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42043169..42045092-chr15:42049532..42051518,2	MCF-7	breast:
2	chr15:42041841..42044077-chr15:42045967..42047583,2	K562	blood:
3	chr15:42039177..42040902-chr15:42043568..42045872,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs61067744	0.86[AFR][1000 genomes]
rs73407232	0.93[AFR][1000 genomes]
rs73407235	0.86[AFR][1000 genomes]
rs73407239	1.00[AFR][1000 genomes]
rs73407262	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049514	chr15:41958482-42081210	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1048655	chr15:41978391-42049360	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
4	nsv1036086	chr15:42004962-42091451	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1041861	chr15:42016097-42062287	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1054671	chr15:42016097-42098896	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv1044347	chr15:42023805-42049360	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1038894	chr15:42038152-42077452	Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41972400-42065200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:42003800-42056000	Weak transcription	Colonic Mucosa	Colon
3	chr15:42009800-42056800	Weak transcription	Fetal Heart	heart
4	chr15:42017400-42062600	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr15:42019400-42060600	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr15:42025000-42045800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr15:42025200-42065400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr15:42025800-42045000	Weak transcription	Stomach Mucosa	stomach
9	chr15:42029000-42052200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:42029000-42054200	Weak transcription	Small Intestine	intestine
11	chr15:42029200-42048400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:42030400-42046400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr15:42035400-42054400	Weak transcription	Pancreas	Pancrea
14	chr15:42035600-42046600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr15:42035800-42047600	Weak transcription	NHEK	skin
16	chr15:42035800-42058200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:42036000-42052800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:42036000-42058400	Weak transcription	Psoas Muscle	Psoas
19	chr15:42037000-42044200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:42038800-42051000	Strong transcription	Primary B cells from peripheral blood	blood
21	chr15:42039000-42044800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr15:42039000-42064400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:42039600-42044000	Strong transcription	Fetal Intestine Large	intestine
24	chr15:42039600-42044200	Strong transcription	Fetal Muscle Trunk	muscle
25	chr15:42039600-42049000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:42039600-42062600	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr15:42039800-42044200	Strong transcription	Primary T cells from cord blood	blood
28	chr15:42039800-42044200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr15:42039800-42044600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr15:42039800-42049200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr15:42040000-42049600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr15:42040000-42061400	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr15:42040200-42043800	Strong transcription	Liver	Liver
34	chr15:42040200-42044000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr15:42040200-42044200	Strong transcription	Spleen	Spleen
36	chr15:42040200-42044600	Strong transcription	Duodenum Mucosa	Duodenum
37	chr15:42040200-42048400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr15:42040200-42049400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr15:42040200-42059800	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr15:42040200-42064400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr15:42040600-42044200	Strong transcription	Ovary	ovary
42	chr15:42040600-42044600	Strong transcription	K562	blood
43	chr15:42040600-42063000	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr15:42040800-42045000	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr15:42041400-42044200	Weak transcription	Fetal Intestine Small	intestine
46	chr15:42041600-42054600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr15:42041800-42047200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr15:42041800-42053400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr15:42041800-42055800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr15:42041800-42056800	Weak transcription	Esophagus	oesophagus

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