Variant report

Variant	rs73407715
Chromosome Location	chr11:10460789-10460790
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1450273	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57796302	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58500338	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59993964	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60043935	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61314883	0.80[AMR][1000 genomes]
rs61628785	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7123414	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73405698	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73405699	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73405702	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73407705	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73407718	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73407783	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv896990	chr11:10458596-10514707	Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10457600-10471800	Weak transcription	NHDF-Ad	bronchial
2	chr11:10458200-10461400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr11:10458600-10463000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:10458800-10463000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:10459000-10461600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:10459000-10463000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:10459400-10465600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr11:10460200-10460800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr11:10460200-10460800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr11:10460200-10462800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr11:10460400-10462400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:10460400-10463600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr11:10460400-10464800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:10460600-10462000	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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