Variant report

Variant	rs73407783
Chromosome Location	chr11:10467621-10467622
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10466009..10469840-chr11:10470987..10473326,3	MCF-7	breast:
2	chr11:10466744..10468864-chr11:10475908..10478177,3	K562	blood:
3	chr11:10464906..10468864-chr11:10475520..10479355,5	K562	blood:
4	chr11:10466561..10468211-chr11:10473032..10475120,2	K562	blood:
5	chr11:10467512..10469886-chr11:10470093..10472685,2	K562	blood:
6	chr11:10449274..10451855-chr11:10466562..10468948,2	K562	blood:

Variant related genes	Relation type
ENSG00000133805	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1450273	0.85[AMR][1000 genomes]
rs2403330	0.83[EUR][1000 genomes]
rs5029459	0.84[EUR][1000 genomes]
rs58115104	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58500338	0.85[AMR][1000 genomes]
rs58910510	0.83[EUR][1000 genomes]
rs59993964	0.85[AMR][1000 genomes]
rs60043935	0.85[AMR][1000 genomes]
rs61314883	0.81[EUR][1000 genomes]
rs61628785	0.85[AMR][1000 genomes]
rs73405699	0.85[AMR][1000 genomes]
rs73405702	0.85[AMR][1000 genomes]
rs73407705	0.85[AMR][1000 genomes]
rs73407715	0.83[AMR][1000 genomes]
rs73407718	0.88[AMR][1000 genomes]
rs73409935	0.81[EUR][1000 genomes]
rs922359	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv896990	chr11:10458596-10514707	Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3475409	chr11:10464338-10470458	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3475420	chr11:10464352-10470454	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10457600-10471800	Weak transcription	NHDF-Ad	bronchial
2	chr11:10464000-10471000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr11:10464000-10471000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:10464600-10471600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:10465400-10471000	Weak transcription	Primary B cells from cord blood	blood
6	chr11:10465600-10468200	Enhancers	Primary T cells from cord blood	blood
7	chr11:10465600-10472000	Weak transcription	Right Atrium	heart
8	chr11:10466000-10469200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:10466200-10468000	Enhancers	Thymus	Thymus
10	chr11:10466600-10471400	Weak transcription	Spleen	Spleen
11	chr11:10466800-10471200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr11:10467000-10471200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:10467000-10471200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:10467200-10471200	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr11:10467200-10471800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr11:10467400-10471000	Weak transcription	Primary B cells from peripheral blood	blood
17	chr11:10467400-10471000	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr11:10467400-10471000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr11:10467400-10471200	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr11:10467400-10471400	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr11:10467400-10471600	Weak transcription	Adipose Nuclei	Adipose
22	chr11:10467600-10469000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr11:10467600-10471000	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr11:10467600-10471000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr11:10467600-10471000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr11:10467600-10471200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr11:10467600-10471200	Weak transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links