Variant report

Variant	rs73409935
Chromosome Location	chr11:10486818-10486819
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11042826	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2403330	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs5029459	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58910510	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61314883	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6484302	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73407783	0.81[EUR][1000 genomes]
rs73409946	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs922359	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv896990	chr11:10458596-10514707	Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10473200-10512000	Weak transcription	Aorta	Aorta
2	chr11:10477800-10489000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:10478000-10487400	Weak transcription	HMEC	breast
4	chr11:10478400-10487200	Weak transcription	Fetal Intestine Large	intestine
5	chr11:10478400-10487400	Weak transcription	Right Ventricle	heart
6	chr11:10478400-10489000	Weak transcription	A549	lung
7	chr11:10478400-10500000	Weak transcription	Fetal Intestine Small	intestine
8	chr11:10478400-10502800	Weak transcription	Pancreas	Pancrea
9	chr11:10478800-10493600	Weak transcription	HSMM	muscle
10	chr11:10478800-10511600	Weak transcription	Psoas Muscle	Psoas
11	chr11:10479000-10502800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr11:10479800-10519400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:10481000-10488000	Weak transcription	Fetal Stomach	stomach
14	chr11:10481200-10487600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:10481200-10494600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:10481400-10487200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr11:10481400-10488400	Weak transcription	NHDF-Ad	bronchial
18	chr11:10482400-10489000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:10482600-10488000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr11:10482600-10488400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:10482600-10488600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:10482600-10489000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:10482600-10489200	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr11:10482800-10487200	Strong transcription	Dnd41	blood
25	chr11:10482800-10487600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr11:10482800-10488000	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr11:10482800-10488600	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr11:10482800-10488600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr11:10482800-10488600	Strong transcription	Thymus	Thymus
30	chr11:10482800-10488800	Strong transcription	Primary T cells from cord blood	blood
31	chr11:10482800-10488800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr11:10483000-10487200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
33	chr11:10483000-10487200	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr11:10483000-10487200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr11:10483000-10487400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr11:10483000-10487400	Strong transcription	Skeletal Muscle Male	skeletal muscle
37	chr11:10483000-10488800	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr11:10483000-10489000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:10483200-10487200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
40	chr11:10483200-10487200	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr11:10483200-10488200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:10483200-10489000	Strong transcription	Fetal Thymus	thymus
43	chr11:10483200-10489200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr11:10483400-10488400	Strong transcription	Primary hematopoietic stem cells	blood
45	chr11:10483400-10488400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr11:10483400-10500600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr11:10483600-10487400	Strong transcription	Esophagus	oesophagus
48	chr11:10483600-10489800	Strong transcription	Primary B cells from peripheral blood	blood
49	chr11:10483800-10487600	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr11:10484000-10488600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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