Variant report

Variant	rs73409946
Chromosome Location	chr11:10496167-10496168
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10495930..10498423-chr11:10500094..10502413,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11042826	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2403330	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3891547	0.86[AFR][1000 genomes]
rs5029459	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56975454	0.81[AFR][1000 genomes]
rs58910510	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61314883	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6484302	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73409935	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs922359	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv896990	chr11:10458596-10514707	Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10473200-10512000	Weak transcription	Aorta	Aorta
2	chr11:10478400-10500000	Weak transcription	Fetal Intestine Small	intestine
3	chr11:10478400-10502800	Weak transcription	Pancreas	Pancrea
4	chr11:10478800-10511600	Weak transcription	Psoas Muscle	Psoas
5	chr11:10479000-10502800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:10479800-10519400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:10483400-10500600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:10484200-10509600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:10484200-10514800	Weak transcription	Colonic Mucosa	Colon
10	chr11:10485000-10515200	Weak transcription	Liver	Liver
11	chr11:10485200-10501000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr11:10485400-10498600	Weak transcription	GM12878-XiMat	blood
13	chr11:10485600-10496800	Weak transcription	NHLF	lung
14	chr11:10485600-10500400	Weak transcription	Adipose Nuclei	Adipose
15	chr11:10485600-10500800	Weak transcription	Fetal Muscle Leg	muscle
16	chr11:10485600-10508200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr11:10485800-10497200	Weak transcription	Lung	lung
18	chr11:10485800-10498400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:10485800-10511600	Weak transcription	Osteobl	bone
20	chr11:10486000-10504800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr11:10486200-10497000	Weak transcription	Brain Angular Gyrus	brain
22	chr11:10486200-10501200	Weak transcription	NHEK	skin
23	chr11:10486600-10498800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr11:10486600-10502600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr11:10486800-10497200	Weak transcription	Brain Substantia Nigra	brain
26	chr11:10486800-10509600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:10486800-10515600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr11:10487200-10496600	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr11:10487200-10503000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr11:10487200-10506200	Weak transcription	Dnd41	blood
31	chr11:10487400-10496800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr11:10487400-10500400	Weak transcription	Esophagus	oesophagus
33	chr11:10487600-10496800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:10488000-10496200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr11:10488600-10498200	Weak transcription	Fetal Stomach	stomach
36	chr11:10488600-10498400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr11:10489000-10496600	Weak transcription	Fetal Thymus	thymus
38	chr11:10489000-10512600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr11:10489200-10500000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:10492400-10496400	Weak transcription	Primary hematopoietic stem cells	blood
41	chr11:10494000-10496800	Strong transcription	Primary B cells from peripheral blood	blood
42	chr11:10494200-10510000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:10494400-10497400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:10494400-10500200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr11:10494600-10497400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:10494600-10497800	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr11:10494600-10509600	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr11:10494800-10496600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr11:10494800-10498000	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr11:10494800-10498400	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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