Variant report

Variant	rs73408252
Chromosome Location	chr6:33640647-33640648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33638667..33640711-chr6:33662007..33664504,2	MCF-7	breast:
2	chr6:33557167..33558102-chr6:33640434..33641022,2	MCF-7	breast:
3	chr6:33587884..33589809-chr6:33639279..33641252,2	MCF-7	breast:
4	chr6:33632367..33634802-chr6:33639776..33642394,2	K562	blood:
5	chr6:33557115..33558665-chr6:33640289..33641376,5	K562	blood:
6	chr6:33635449..33638444-chr6:33638493..33640843,3	K562	blood:
7	chr6:33638337..33641498-chr6:33643269..33645828,4	K562	blood:
8	chr6:33557445..33558321-chr6:33640204..33641251,4	MCF-7	breast:
9	chr6:33638801..33640404-chr6:33640561..33642617,2	K562	blood:
10	chr6:33553164..33555974-chr6:33639876..33642136,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000269490	Chromatin interaction
ENSG00000096433	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1536041	0.82[ASN][1000 genomes]
rs3736893	0.82[ASN][1000 genomes]
rs41271249	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4713651	0.82[ASN][1000 genomes]
rs6909581	0.85[ASN][1000 genomes]
rs7752472	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9357163	0.84[ASN][1000 genomes]
rs9366827	0.82[ASN][1000 genomes]
rs9380372	0.82[ASN][1000 genomes]
rs942638	0.84[ASN][1000 genomes]
rs942639	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
2	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
3	nsv470811	chr6:33622933-33647651	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv602838	chr6:33624733-33650743	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv885771	chr6:33626717-33660143	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv522906	chr6:33638180-33647651	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33603400-33641200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:33606800-33646600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:33608200-33640800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:33611400-33643400	Weak transcription	Left Ventricle	heart
5	chr6:33613000-33659400	Strong transcription	Fetal Intestine Small	intestine
6	chr6:33613200-33660400	Strong transcription	Thymus	Thymus
7	chr6:33615000-33660800	Strong transcription	Fetal Intestine Large	intestine
8	chr6:33619600-33660800	Strong transcription	Rectal Mucosa Donor 29	rectum
9	chr6:33621000-33659400	Strong transcription	Duodenum Mucosa	Duodenum
10	chr6:33621400-33643400	Strong transcription	Spleen	Spleen
11	chr6:33621400-33662200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:33621400-33672600	Strong transcription	Dnd41	blood
13	chr6:33622000-33660000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:33622400-33644400	Strong transcription	Gastric	stomach
15	chr6:33623200-33649000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr6:33623400-33641000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:33623400-33644000	Strong transcription	Fetal Stomach	stomach
18	chr6:33624600-33664800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:33625200-33645200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr6:33629000-33662800	Weak transcription	Colon Smooth Muscle	Colon
21	chr6:33630200-33651000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:33630400-33650800	Weak transcription	Ovary	ovary
23	chr6:33630400-33660800	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr6:33630600-33645800	Strong transcription	Fetal Thymus	thymus
25	chr6:33631400-33642800	Strong transcription	GM12878-XiMat	blood
26	chr6:33631600-33667000	Strong transcription	H9 Cell Line	embryonic stem cell
27	chr6:33631800-33640800	Weak transcription	Fetal Brain Male	brain
28	chr6:33631800-33649400	Strong transcription	Pancreas	Pancrea
29	chr6:33631800-33661200	Weak transcription	Liver	Liver
30	chr6:33632200-33640800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr6:33633400-33642400	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:33635200-33640800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:33635400-33641200	Weak transcription	Primary B cells from cord blood	blood
34	chr6:33636000-33641600	Strong transcription	Fetal Lung	lung
35	chr6:33636600-33640800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr6:33636600-33660600	Strong transcription	Colonic Mucosa	Colon
37	chr6:33636800-33640800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr6:33636800-33660200	Strong transcription	Lung	lung
39	chr6:33636800-33661400	Strong transcription	Sigmoid Colon	Sigmoid Colon
40	chr6:33637000-33643600	Weak transcription	K562	blood
41	chr6:33637000-33650000	Strong transcription	Primary T cells from cord blood	blood
42	chr6:33637200-33642600	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr6:33637200-33650400	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr6:33637200-33650400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:33637400-33641200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr6:33637400-33641400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr6:33637400-33641600	Weak transcription	Placenta	Placenta
48	chr6:33637400-33650400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr6:33637400-33661600	Strong transcription	Esophagus	oesophagus
50	chr6:33637600-33646400	Strong transcription	Primary B cells from peripheral blood	blood

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