Variant report

Variant	rs9380372
Chromosome Location	chr6:33636232-33636233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33635650..33638003-chr6:33745189..33746765,2	K562	blood:
2	chr6:33635449..33638444-chr6:33638493..33640843,3	K562	blood:
3	chr6:33604565..33606650-chr6:33635359..33638294,2	K562	blood:
4	chr6:33634324..33636697-chr6:33642308..33645021,2	MCF-7	breast:
5	chr6:33628674..33633402-chr6:33634889..33637916,6	MCF-7	breast:
6	chr6:33599307..33602028-chr6:33636164..33638489,2	MCF-7	breast:
7	chr6:33627824..33631151-chr6:33635216..33637671,3	MCF-7	breast:
8	chr6:33632139..33634646-chr6:33635663..33639290,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000161904	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1536041	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3736893	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4713651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909581	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73408252	0.82[ASN][1000 genomes]
rs9357163	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9366827	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs942638	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs942639	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
2	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
3	nsv470811	chr6:33622933-33647651	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv602838	chr6:33624733-33650743	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv885771	chr6:33626717-33660143	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33602400-33636400	Weak transcription	HSMMtube	muscle
2	chr6:33603400-33640400	Weak transcription	HUVEC	blood vessel
3	chr6:33603400-33641200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:33605200-33636400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:33606800-33646600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:33608200-33640800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:33611400-33643400	Weak transcription	Left Ventricle	heart
8	chr6:33613000-33659400	Strong transcription	Fetal Intestine Small	intestine
9	chr6:33613200-33660400	Strong transcription	Thymus	Thymus
10	chr6:33615000-33660800	Strong transcription	Fetal Intestine Large	intestine
11	chr6:33619600-33660800	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr6:33621000-33659400	Strong transcription	Duodenum Mucosa	Duodenum
13	chr6:33621200-33636400	Strong transcription	Primary T cells from cord blood	blood
14	chr6:33621200-33636400	Strong transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:33621400-33636400	Strong transcription	Lung	lung
16	chr6:33621400-33643400	Strong transcription	Spleen	Spleen
17	chr6:33621400-33662200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:33621400-33672600	Strong transcription	Dnd41	blood
19	chr6:33622000-33660000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:33622400-33644400	Strong transcription	Gastric	stomach
21	chr6:33623200-33649000	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr6:33623400-33641000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:33623400-33644000	Strong transcription	Fetal Stomach	stomach
24	chr6:33624200-33639200	Strong transcription	NHLF	lung
25	chr6:33624600-33664800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr6:33624800-33639400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:33625200-33645200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr6:33626000-33638600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:33626600-33638800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:33628800-33636600	Strong transcription	NHDF-Ad	bronchial
31	chr6:33629000-33662800	Weak transcription	Colon Smooth Muscle	Colon
32	chr6:33630200-33651000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:33630400-33636400	Strong transcription	Esophagus	oesophagus
34	chr6:33630400-33640000	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr6:33630400-33650800	Weak transcription	Ovary	ovary
36	chr6:33630400-33660800	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr6:33630600-33638000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:33630600-33645800	Strong transcription	Fetal Thymus	thymus
39	chr6:33631200-33640200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:33631400-33642800	Strong transcription	GM12878-XiMat	blood
41	chr6:33631600-33636400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:33631600-33667000	Strong transcription	H9 Cell Line	embryonic stem cell
43	chr6:33631800-33640800	Weak transcription	Fetal Brain Male	brain
44	chr6:33631800-33649400	Strong transcription	Pancreas	Pancrea
45	chr6:33631800-33661200	Weak transcription	Liver	Liver
46	chr6:33632000-33636600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:33632200-33640800	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr6:33632400-33636600	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr6:33632400-33637400	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr6:33632600-33639200	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links