Variant report

Variant	rs73411578
Chromosome Location	chr6:37035571-37035572
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4714034	0.86[ASN][1000 genomes]
rs9357234	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv518386	chr6:36942746-37037670	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37028200-37039200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr6:37028200-37039400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:37028400-37039200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:37029600-37039600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:37029800-37036400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:37029800-37037400	Weak transcription	Spleen	Spleen
7	chr6:37030400-37039600	Weak transcription	A549	lung
8	chr6:37032800-37039200	Weak transcription	K562	blood
9	chr6:37033800-37036800	Enhancers	HepG2	liver
10	chr6:37035400-37036600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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