Variant report

Variant	rs9357234
Chromosome Location	chr6:37030217-37030218
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37013215..37030579-chr6:37135643..37146812,60	K562	blood:
2	chr6:37029733..37032417-chr6:37208544..37210313,2	K562	blood:
3	chr6:37013215..37030665-chr6:37134901..37148307,66	K562	blood:
4	chr6:37021819..37031002-chr6:37065955..37074085,20	MCF-7	breast:
5	chr6:37016328..37032410-chr6:37132402..37145966,91	MCF-7	breast:
6	chr6:37028754..37030470-chr6:37049218..37051479,2	K562	blood:
7	chr6:37029336..37032184-chr6:37039647..37042976,3	MCF-7	breast:
8	chr6:37027099..37030994-chr6:37049896..37053173,4	MCF-7	breast:
9	chr6:37026387..37030329-chr6:37076623..37079658,4	K562	blood:

No data

No data

No data

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4714034	0.92[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs73411578	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv518386	chr6:36942746-37037670	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9357234	PIM1	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37027200-37030400	Enhancers	Adipose Nuclei	Adipose
2	chr6:37027600-37032400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:37028200-37030400	Enhancers	A549	lung
4	chr6:37028200-37030800	Enhancers	K562	blood
5	chr6:37028200-37039200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:37028200-37039400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:37028400-37039200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:37029400-37030600	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr6:37029600-37032200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:37029600-37039600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:37029800-37030400	Enhancers	Liver	Liver
12	chr6:37029800-37036400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:37029800-37037400	Weak transcription	Spleen	Spleen
14	chr6:37030000-37033800	Weak transcription	HepG2	liver
15	chr6:37030200-37030600	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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