Variant report

Variant	rs73411768
Chromosome Location	chr15:55067008-55067009
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:55062888..55065533-chr15:55066470..55069394,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs12102179	1.00[EUR][1000 genomes]
rs1392978	1.00[EUR][1000 genomes]
rs16975037	1.00[EUR][1000 genomes]
rs16975311	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16975318	1.00[AMR][1000 genomes]
rs16975340	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16975349	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16975367	1.00[EUR][1000 genomes]
rs16975416	1.00[EUR][1000 genomes]
rs28372662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28436947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28439786	1.00[EUR][1000 genomes]
rs28483393	1.00[EUR][1000 genomes]
rs28679735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28679864	1.00[EUR][1000 genomes]
rs28713652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28714270	1.00[EUR][1000 genomes]
rs28754740	1.00[EUR][1000 genomes]
rs28785811	1.00[EUR][1000 genomes]
rs59512027	1.00[EUR][1000 genomes]
rs59921388	1.00[EUR][1000 genomes]
rs60402246	1.00[EUR][1000 genomes]
rs6493718	1.00[EUR][1000 genomes]
rs6493721	1.00[EUR][1000 genomes]
rs7165857	1.00[EUR][1000 genomes]
rs7166215	1.00[EUR][1000 genomes]
rs7166409	1.00[EUR][1000 genomes]
rs7168019	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168562	1.00[EUR][1000 genomes]
rs7172202	1.00[EUR][1000 genomes]
rs7172381	1.00[EUR][1000 genomes]
rs7172738	1.00[EUR][1000 genomes]
rs7181085	1.00[EUR][1000 genomes]
rs7181098	1.00[EUR][1000 genomes]
rs73403891	1.00[EUR][1000 genomes]
rs73403893	1.00[EUR][1000 genomes]
rs73405705	1.00[EUR][1000 genomes]
rs73405751	1.00[EUR][1000 genomes]
rs73411783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73413754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73413776	1.00[EUR][1000 genomes]
rs73413789	1.00[EUR][1000 genomes]
rs8025003	1.00[EUR][1000 genomes]
rs8026692	1.00[EUR][1000 genomes]
rs8028137	1.00[EUR][1000 genomes]
rs8033480	1.00[EUR][1000 genomes]
rs8042182	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8043485	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv833013	chr15:54927825-55135274	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv457155	chr15:54943193-55078723	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv569519	chr15:54943193-55078723	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1035785	chr15:54951691-55266222	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv542390	chr15:54951691-55266222	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1045264	chr15:54981538-55103777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1039860	chr15:55010228-55198111	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1043176	chr15:55010228-55563000	Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
10	esv3418901	chr15:55066629-55067153	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55065000-55070200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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