Variant report

Variant	rs60402246
Chromosome Location	chr15:55125493-55125494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12102179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1392978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16975311	1.00[EUR][1000 genomes]
rs16975340	1.00[EUR][1000 genomes]
rs16975349	1.00[EUR][1000 genomes]
rs16975367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16975416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28372662	1.00[EUR][1000 genomes]
rs28436947	1.00[EUR][1000 genomes]
rs28679735	1.00[EUR][1000 genomes]
rs28679864	1.00[EUR][1000 genomes]
rs28713652	1.00[EUR][1000 genomes]
rs59512027	1.00[EUR][1000 genomes]
rs59921388	1.00[EUR][1000 genomes]
rs6493718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6493721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7165857	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7166215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7166409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168019	1.00[EUR][1000 genomes]
rs7168562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7172202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7172381	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7172738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7181085	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7181098	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73405751	1.00[EUR][1000 genomes]
rs73411768	1.00[EUR][1000 genomes]
rs73411783	1.00[EUR][1000 genomes]
rs73413754	1.00[EUR][1000 genomes]
rs73413776	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73413789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8025003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8026692	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8028137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8033480	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8042182	1.00[EUR][1000 genomes]
rs8043485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833013	chr15:54927825-55135274	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1035785	chr15:54951691-55266222	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv542390	chr15:54951691-55266222	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1039860	chr15:55010228-55198111	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1043176	chr15:55010228-55563000	Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv525041	chr15:55068209-55136755	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1047424	chr15:55098585-55243518	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv833014	chr15:55099183-55249491	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1046155	chr15:55123603-55137606	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55117600-55131800	Weak transcription	Aorta	Aorta
2	chr15:55125400-55125600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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