Variant report

Variant	rs73411977
Chromosome Location	chr9:14170950-14170951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs60113220	1.00[AMR][1000 genomes]
rs6474819	1.00[AMR][1000 genomes]
rs73409955	1.00[AMR][1000 genomes]
rs73411960	1.00[AMR][1000 genomes]
rs73411973	1.00[AMR][1000 genomes]
rs73411975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73411993	1.00[AMR][1000 genomes]
rs7846937	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv429998	chr9:14043516-14214688	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv892596	chr9:14145487-14208724	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv892597	chr9:14163383-14233159	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14116600-14179200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr9:14117000-14171200	Weak transcription	Hela-S3	cervix
3	chr9:14123800-14198600	Weak transcription	Gastric	stomach
4	chr9:14131800-14173200	Weak transcription	Pancreas	Pancrea
5	chr9:14134000-14181000	Weak transcription	Ovary	ovary
6	chr9:14156800-14175600	Weak transcription	Liver	Liver
7	chr9:14157600-14173600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr9:14159800-14176600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr9:14159800-14180200	Weak transcription	Fetal Stomach	stomach
10	chr9:14160600-14181400	Weak transcription	HSMM	muscle
11	chr9:14162400-14175400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:14165000-14180200	Weak transcription	Brain Angular Gyrus	brain
13	chr9:14165600-14179200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr9:14165800-14173600	Weak transcription	Fetal Lung	lung
15	chr9:14165800-14178800	Weak transcription	Brain Germinal Matrix	brain
16	chr9:14165800-14178800	Weak transcription	Colon Smooth Muscle	Colon
17	chr9:14165800-14179200	Weak transcription	Fetal Brain Male	brain
18	chr9:14165800-14180200	Weak transcription	Brain Anterior Caudate	brain
19	chr9:14165800-14181800	Weak transcription	Psoas Muscle	Psoas
20	chr9:14166200-14183200	Weak transcription	Esophagus	oesophagus
21	chr9:14168200-14171400	Strong transcription	Fetal Muscle Leg	muscle
22	chr9:14168200-14173600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr9:14168800-14179600	Weak transcription	Fetal Brain Female	brain
24	chr9:14169600-14173600	Weak transcription	Fetal Heart	heart
25	chr9:14170000-14171800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr9:14170200-14171000	Enhancers	NHEK	skin
27	chr9:14170200-14171400	Enhancers	Right Ventricle	heart
28	chr9:14170200-14171600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr9:14170200-14171600	Enhancers	Adipose Nuclei	Adipose
30	chr9:14170200-14171800	Enhancers	HMEC	breast
31	chr9:14170200-14172000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr9:14170400-14186200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr9:14170600-14171400	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr9:14170600-14171400	Genic enhancers	Left Ventricle	heart
35	chr9:14170600-14171800	Enhancers	Osteobl	bone
36	chr9:14170600-14172000	Flanking Active TSS	A549	lung
37	chr9:14170600-14172000	Enhancers	HUVEC	blood vessel
38	chr9:14170800-14171600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr9:14170800-14171600	Enhancers	Rectal Smooth Muscle	rectum
40	chr9:14170800-14171600	Enhancers	NH-A	brain
41	chr9:14170800-14174000	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr9:14170800-14178800	Weak transcription	Aorta	Aorta
43	chr9:14170800-14180200	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links