Variant report

Variant	rs7846937
Chromosome Location	chr9:14246586-14246587
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6474819	1.00[AMR][1000 genomes]
rs73409955	1.00[AMR][1000 genomes]
rs73411960	1.00[AMR][1000 genomes]
rs73411973	1.00[AMR][1000 genomes]
rs73411975	1.00[AMR][1000 genomes]
rs73411977	1.00[AMR][1000 genomes]
rs73411993	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv892598	chr9:14234315-14274950	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14224400-14246800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr9:14238800-14249800	Weak transcription	Fetal Intestine Small	intestine
3	chr9:14238800-14250000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:14239800-14251200	Weak transcription	Hela-S3	cervix
5	chr9:14241000-14249800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:14241000-14250000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr9:14241200-14247000	Weak transcription	Fetal Stomach	stomach
8	chr9:14241200-14247200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr9:14241200-14247400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr9:14241200-14247400	Weak transcription	Brain Substantia Nigra	brain
11	chr9:14241200-14247600	Enhancers	Fetal Heart	heart
12	chr9:14241200-14247800	Weak transcription	Pancreas	Pancrea
13	chr9:14241200-14249600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:14241400-14247200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr9:14241400-14249800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr9:14241400-14251000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr9:14241400-14251000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr9:14241400-14251200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr9:14242800-14249400	Weak transcription	Brain Angular Gyrus	brain
20	chr9:14243800-14250000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr9:14244000-14251000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr9:14244000-14251200	Weak transcription	Fetal Brain Male	brain
23	chr9:14244200-14246800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr9:14244200-14250200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr9:14244400-14250200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:14244600-14248800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr9:14245000-14247000	Weak transcription	Fetal Brain Female	brain
28	chr9:14245000-14247000	Enhancers	Osteobl	bone
29	chr9:14245200-14246600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:14245200-14247000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr9:14245200-14247600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr9:14245200-14250200	Weak transcription	Liver	Liver
33	chr9:14245400-14246600	Enhancers	Fetal Lung	lung
34	chr9:14245400-14246600	Enhancers	HSMMtube	muscle
35	chr9:14245400-14247000	Weak transcription	Brain Hippocampus Middle	brain
36	chr9:14245400-14247000	Weak transcription	Colon Smooth Muscle	Colon
37	chr9:14245600-14246600	Enhancers	Adipose Nuclei	Adipose
38	chr9:14245600-14246600	Enhancers	Placenta	Placenta
39	chr9:14245600-14247600	Enhancers	Left Ventricle	heart
40	chr9:14245600-14249800	Weak transcription	Stomach Mucosa	stomach
41	chr9:14246000-14246600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr9:14246000-14246600	Enhancers	Brain Germinal Matrix	brain
43	chr9:14246000-14246600	Enhancers	NHLF	lung
44	chr9:14246000-14247400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr9:14246000-14247600	Enhancers	Right Ventricle	heart
46	chr9:14246000-14247600	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr9:14246200-14246600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr9:14246200-14246600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr9:14246200-14246600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr9:14246200-14246600	Enhancers	Muscle Satellite Cultured Cells	--

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