Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82460900..82463584-chr6:82539906..82542371,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112773	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10455391	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10455393	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10455394	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10455397	0.85[EUR][1000 genomes]
rs12190137	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12190230	0.85[EUR][1000 genomes]
rs12192593	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12210484	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12211940	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12212024	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12212783	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12663436	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13193127	0.85[EUR][1000 genomes]
rs1931636	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs194627	0.82[EUR][1000 genomes]
rs2050302	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2050303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6926755	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7758707	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs978238	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82529400-82544000	Weak transcription	Right Atrium	heart
2	chr6:82537600-82543400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:82540200-82544400	Enhancers	HepG2	liver
4	chr6:82540600-82544600	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr6:82541000-82544800	Enhancers	Fetal Intestine Large	intestine
6	chr6:82541200-82542200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:82541200-82546000	Enhancers	Stomach Mucosa	stomach
8	chr6:82541400-82542400	Enhancers	Small Intestine	intestine
9	chr6:82541400-82542600	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr6:82541400-82544600	Enhancers	Fetal Intestine Small	intestine
11	chr6:82541600-82542200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:82541600-82543600	Weak transcription	A549	lung
13	chr6:82541600-82543800	Weak transcription	Pancreas	Pancrea
14	chr6:82542000-82543200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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