Variant report

Variant	rs6926755
Chromosome Location	chr6:82555681-82555682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10455390	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10455391	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10455393	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10455394	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10455395	0.80[AMR][1000 genomes]
rs10455397	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10806230	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12190137	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12190230	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12192593	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210484	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12211940	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12212024	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12212783	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12663436	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13193127	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1931636	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050302	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2050303	0.86[JPT][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6940839	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7341295	0.87[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7758707	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs978238	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82549800-82556400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:82553200-82555800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:82553400-82559000	Weak transcription	Left Ventricle	heart
4	chr6:82553600-82556800	Weak transcription	HepG2	liver
5	chr6:82553600-82557000	Weak transcription	Stomach Mucosa	stomach
6	chr6:82553800-82556200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:82554400-82556200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:82554600-82556000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:82554800-82556000	Enhancers	Ovary	ovary
10	chr6:82555000-82555800	Enhancers	Primary hematopoietic stem cells	blood
11	chr6:82555400-82556000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:82555600-82567400	Weak transcription	Aorta	Aorta

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