Variant report

Variant	rs10455395
Chromosome Location	chr6:82559127-82559128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10455392	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10455393	0.83[AMR][1000 genomes]
rs10455394	0.83[AMR][1000 genomes]
rs10455396	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10484870	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12189633	0.81[ASN][1000 genomes]
rs12190482	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12192593	0.81[AMR][1000 genomes]
rs12192690	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12194273	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12196654	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12201948	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12203649	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12210484	0.83[AMR][1000 genomes]
rs12210686	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12211940	0.83[AMR][1000 genomes]
rs12212024	0.83[AMR][1000 genomes]
rs12212783	0.81[AMR][1000 genomes]
rs12214571	0.80[EUR][1000 genomes]
rs12216177	0.81[ASN][1000 genomes]
rs12662590	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12663436	0.83[AMR][1000 genomes]
rs1291466	0.80[ASN][1000 genomes]
rs1931621	0.93[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs194603	0.85[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs194635	0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2050303	0.83[AMR][1000 genomes]
rs3763244	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3812147	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56710219	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6926755	0.80[AMR][1000 genomes]
rs6940643	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs733415	0.80[ASN][1000 genomes]
rs915123	0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs978238	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82555600-82567400	Weak transcription	Aorta	Aorta
2	chr6:82556200-82565200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:82556800-82559200	Enhancers	HepG2	liver
4	chr6:82558200-82563600	Weak transcription	Stomach Mucosa	stomach
5	chr6:82558200-82572000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:82559000-82559200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:82559000-82559200	Enhancers	Gastric	stomach
8	chr6:82559000-82559200	Enhancers	Left Ventricle	heart
9	chr6:82559000-82559200	Enhancers	Right Atrium	heart
10	chr6:82559000-82559400	Enhancers	Pancreas	Pancrea

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