Variant report

Variant	rs1291466
Chromosome Location	chr6:82532541-82532542
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82496401..82499366-chr6:82532324..82534807,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10455133	0.85[CEU][hapmap];0.83[CHB][hapmap];0.85[EUR][1000 genomes]
rs10455392	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs10455395	0.80[ASN][1000 genomes]
rs10455396	0.83[ASN][1000 genomes]
rs12189633	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12192690	0.80[ASN][1000 genomes]
rs12194273	0.85[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12196654	0.85[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs12201948	0.83[ASN][1000 genomes]
rs12215262	0.83[EUR][1000 genomes]
rs12216177	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12662590	0.81[ASN][1000 genomes]
rs1931621	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs194602	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs194603	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs194623	0.92[EUR][1000 genomes]
rs194625	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs194628	0.92[EUR][1000 genomes]
rs194629	0.88[CEU][hapmap];0.93[EUR][1000 genomes]
rs194630	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs194632	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs194634	0.89[CEU][hapmap];0.93[EUR][1000 genomes]
rs194635	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs194636	0.84[CEU][hapmap];0.93[EUR][1000 genomes]
rs3812147	0.82[ASN][1000 genomes]
rs6923136	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6940643	0.80[ASN][1000 genomes]
rs733415	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs915123	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs926856	0.88[CEU][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82523800-82532600	Enhancers	Stomach Mucosa	stomach
2	chr6:82529000-82532600	Enhancers	HepG2	liver
3	chr6:82529400-82544000	Weak transcription	Right Atrium	heart
4	chr6:82530600-82532600	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr6:82532000-82532600	Enhancers	Liver	Liver

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