Variant report

Variant	rs194625
Chromosome Location	chr6:82510497-82510498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82497503..82499926-chr6:82508521..82510695,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10455133	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs10455392	0.88[CEU][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap]
rs12189633	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12194273	0.88[CEU][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12196654	0.88[CEU][hapmap];0.95[JPT][hapmap]
rs12215262	0.83[EUR][1000 genomes]
rs12216177	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1291466	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs191786	0.86[MKK][hapmap]
rs1931621	0.84[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs194602	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs194603	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs194623	0.93[EUR][1000 genomes]
rs194628	0.93[EUR][1000 genomes]
rs194629	0.92[CEU][hapmap];0.93[GIH][hapmap];0.80[MEX][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs194630	0.92[CEU][hapmap];0.93[GIH][hapmap];0.80[MEX][hapmap];0.88[TSI][hapmap];0.93[EUR][1000 genomes]
rs194632	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs194634	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs194635	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs194636	0.88[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6923136	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs733415	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs915123	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs926856	0.92[CEU][hapmap];0.93[GIH][hapmap];0.80[MEX][hapmap];0.88[TSI][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs194625	ME1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82507600-82513200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:82508000-82511600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:82509600-82516600	Weak transcription	Stomach Mucosa	stomach

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