Variant report

Variant	rs194629
Chromosome Location	chr6:82516023-82516024
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:82515412..82518371-chr6:82518489..82521368,3	MCF-7	breast:
2	chr6:82462188..82464622-chr6:82513925..82516932,3	MCF-7	breast:
3	chr6:82460838..82463430-chr6:82515325..82518530,3	MCF-7	breast:
4	chr6:82474912..82477439-chr6:82515364..82517763,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112773	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10455133	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs10455392	0.81[CEU][hapmap]
rs12189633	0.93[EUR][1000 genomes]
rs12194273	0.80[CEU][hapmap]
rs12196654	0.81[CEU][hapmap]
rs12215262	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs12216177	0.92[EUR][1000 genomes]
rs1291466	0.93[EUR][1000 genomes]
rs1931621	0.80[JPT][hapmap]
rs194602	0.93[EUR][1000 genomes]
rs194603	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs194623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs194625	0.92[EUR][1000 genomes]
rs194628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs194630	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194632	0.94[EUR][1000 genomes]
rs194634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs194635	0.92[CEU][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap];0.88[TSI][hapmap];0.94[EUR][1000 genomes]
rs194636	1.00[ASW][hapmap];0.96[CEU][hapmap];0.89[GIH][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6923136	0.93[EUR][1000 genomes]
rs733415	0.92[EUR][1000 genomes]
rs915123	0.92[CEU][hapmap];0.91[GIH][hapmap];0.80[MEX][hapmap];0.88[TSI][hapmap];0.93[EUR][1000 genomes]
rs926856	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82509600-82516600	Weak transcription	Stomach Mucosa	stomach
2	chr6:82513000-82517800	Weak transcription	Ovary	ovary

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