Variant report

Variant	rs194603
Chromosome Location	chr6:82527373-82527374
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:82475840..82480204-chr6:82524356..82527900,4	MCF-7	breast:
2	chr6:82461003..82464432-chr6:82526169..82529766,5	MCF-7	breast:
3	chr6:82495383..82498182-chr6:82525424..82528036,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112773	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10455133	0.89[CEU][hapmap];0.88[CHB][hapmap];0.86[EUR][1000 genomes]
rs10455392	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs10455396	0.80[ASN][1000 genomes]
rs12189633	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12194273	0.89[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12196654	0.89[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs12215262	0.84[EUR][1000 genomes]
rs12216177	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1291466	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1931621	0.85[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs194602	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs194623	0.93[EUR][1000 genomes]
rs194625	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs194628	0.93[EUR][1000 genomes]
rs194629	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs194630	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs194632	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs194634	0.93[CEU][hapmap];0.94[EUR][1000 genomes]
rs194635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs194636	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6923136	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs733415	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs915123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs926856	0.92[CEU][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82517200-82530600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:82519200-82528800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:82522800-82531400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:82523000-82530000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:82523200-82528000	Weak transcription	Primary B cells from cord blood	blood
6	chr6:82523400-82527800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:82523400-82528000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:82523800-82527400	Enhancers	Hela-S3	cervix
9	chr6:82523800-82532600	Enhancers	Stomach Mucosa	stomach
10	chr6:82524000-82528000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr6:82524000-82528200	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr6:82524600-82528800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:82524800-82528600	Weak transcription	Right Atrium	heart
14	chr6:82524800-82528800	Weak transcription	Gastric	stomach
15	chr6:82524800-82529000	Weak transcription	NHLF	lung
16	chr6:82525000-82528400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:82525000-82529000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:82525200-82527400	Enhancers	HepG2	liver
19	chr6:82525200-82528200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:82525200-82529000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr6:82525400-82528000	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr6:82525600-82527800	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr6:82526400-82529000	Weak transcription	Placenta	Placenta
24	chr6:82526600-82528600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:82526600-82528800	Weak transcription	NHDF-Ad	bronchial
26	chr6:82526600-82530200	Weak transcription	Liver	Liver
27	chr6:82527000-82527600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:82527200-82528600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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