Variant report

Variant	rs194632
Chromosome Location	chr6:82519781-82519782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:82462237..82465542-chr6:82518745..82522401,4	MCF-7	breast:
2	chr6:82519114..82521777-chr6:82521792..82524425,2	MCF-7	breast:
3	chr6:82515412..82518371-chr6:82518489..82521368,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224995	Chromatin interaction
ENSG00000112773	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10455133	0.86[EUR][1000 genomes]
rs12189633	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12194273	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12215262	0.84[EUR][1000 genomes]
rs12216177	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1291466	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1931621	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs194602	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs194603	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs194623	0.93[EUR][1000 genomes]
rs194625	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs194628	0.93[EUR][1000 genomes]
rs194629	0.94[EUR][1000 genomes]
rs194630	0.93[EUR][1000 genomes]
rs194634	0.94[EUR][1000 genomes]
rs194635	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194636	0.94[EUR][1000 genomes]
rs6923136	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs733415	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs915123	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs926856	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82517200-82530600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:82517600-82522400	Weak transcription	HepG2	liver
3	chr6:82517800-82519800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:82517800-82520600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr6:82518400-82519800	Flanking Active TSS	Primary B cells from cord blood	blood
6	chr6:82518400-82520000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
7	chr6:82518800-82521400	Enhancers	Colon Smooth Muscle	Colon
8	chr6:82518800-82522400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:82518800-82524200	Weak transcription	NHLF	lung
10	chr6:82519000-82519800	Enhancers	Fetal Stomach	stomach
11	chr6:82519200-82520000	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr6:82519200-82523000	Weak transcription	Adipose Nuclei	Adipose
13	chr6:82519200-82524200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:82519200-82524200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:82519200-82524200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:82519200-82528800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr6:82519400-82519800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:82519400-82519800	Enhancers	Ovary	ovary
19	chr6:82519400-82520000	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr6:82519400-82520400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr6:82519400-82520600	Enhancers	Primary B cells from peripheral blood	blood
22	chr6:82519400-82520600	Enhancers	HUVEC	blood vessel
23	chr6:82519400-82522400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr6:82519400-82524200	Weak transcription	Osteobl	bone
25	chr6:82519600-82522000	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr6:82519600-82522000	Enhancers	Primary hematopoietic stem cells	blood

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