Variant report

Variant	rs12201948
Chromosome Location	chr6:82557483-82557484
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10455133	0.81[CEU][hapmap]
rs10455392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10455395	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10455396	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10484870	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12189633	0.83[ASN][1000 genomes]
rs12190482	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12192690	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12194273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12196654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12203649	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12210686	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12214571	0.81[EUR][1000 genomes]
rs12216177	0.83[ASN][1000 genomes]
rs12662590	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1291466	0.83[ASN][1000 genomes]
rs1931621	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs194603	0.89[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs194629	0.84[CEU][hapmap]
rs194630	0.84[CEU][hapmap]
rs194634	0.85[CEU][hapmap]
rs194635	0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs3763244	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3812147	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56710219	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6940643	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs733415	0.83[ASN][1000 genomes]
rs915123	0.88[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs926856	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82553400-82559000	Weak transcription	Left Ventricle	heart
2	chr6:82555600-82567400	Weak transcription	Aorta	Aorta
3	chr6:82556000-82558000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:82556200-82565200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:82556600-82558200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:82556800-82559200	Enhancers	HepG2	liver
7	chr6:82557000-82558200	Enhancers	Stomach Mucosa	stomach
8	chr6:82557400-82558200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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