Variant report

Variant	rs56710219
Chromosome Location	chr6:82567202-82567203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10455392	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10455395	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10455396	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10484870	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12190482	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12192690	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12196654	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12201948	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12203649	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12210686	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12214571	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12662590	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3763244	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3812147	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6940643	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3353008	chr6:82567151-82567322	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv3398957	chr6:82567171-82567292	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82555600-82567400	Weak transcription	Aorta	Aorta
2	chr6:82558200-82572000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:82565600-82569400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:82565600-82569600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:82565600-82572200	Weak transcription	HepG2	liver
6	chr6:82566400-82568200	Enhancers	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links