Variant report

Variant	rs12192690
Chromosome Location	chr6:82576999-82577000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10455392	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10455395	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10455396	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10484870	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12189633	0.81[ASN][1000 genomes]
rs12190482	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12194273	0.81[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs12196654	0.82[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12201948	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12203649	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12210686	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12214571	0.86[EUR][1000 genomes]
rs12216177	0.81[ASN][1000 genomes]
rs12662590	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1291466	0.80[ASN][1000 genomes]
rs1931621	0.88[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs194603	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs194635	0.81[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs3763244	0.87[AMR][1000 genomes]
rs3812147	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56710219	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6940643	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs733415	0.80[ASN][1000 genomes]
rs915123	0.81[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82573400-82579200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:82574600-82577600	Enhancers	Stomach Mucosa	stomach
3	chr6:82574800-82577000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:82575600-82579200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:82576000-82579000	Weak transcription	HepG2	liver
6	chr6:82576200-82579200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:82576200-82579200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:82576200-82579400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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