Variant report

Variant	rs10484870
Chromosome Location	chr6:82567401-82567402
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82566803..82570893-chr6:82571199..82574802,4	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10455392	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10455395	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10455396	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12189633	0.80[ASN][1000 genomes]
rs12190482	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12192690	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12194273	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12196654	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12201948	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12203649	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12210686	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12214571	0.93[EUR][1000 genomes]
rs12216177	0.80[ASN][1000 genomes]
rs12662590	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1931621	0.92[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs194603	0.85[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs194635	0.84[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs3763244	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3812147	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56710219	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6940643	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs915123	0.84[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82558200-82572000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:82565600-82569400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:82565600-82569600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:82565600-82572200	Weak transcription	HepG2	liver
5	chr6:82566400-82568200	Enhancers	Stomach Mucosa	stomach
6	chr6:82567400-82568000	Enhancers	Aorta	Aorta
7	chr6:82567400-82568600	Enhancers	Fetal Heart	heart

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