Variant report

Variant	rs6940643
Chromosome Location	chr6:82575450-82575451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10455392	0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10455395	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10455396	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10484870	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12189633	0.81[ASN][1000 genomes]
rs12190482	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12192690	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194273	0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs12196654	0.87[JPT][hapmap];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12201948	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12203649	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12210686	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12214571	0.86[EUR][1000 genomes]
rs12216177	0.81[ASN][1000 genomes]
rs12662590	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1291466	0.80[ASN][1000 genomes]
rs1931621	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs194603	0.83[JPT][hapmap]
rs194635	0.82[JPT][hapmap]
rs3763244	0.87[AMR][1000 genomes]
rs3812147	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56710219	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs733415	0.80[ASN][1000 genomes]
rs915123	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82572000-82576200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:82572200-82576000	Enhancers	HepG2	liver
3	chr6:82572800-82576000	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr6:82573400-82579200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:82573600-82576400	Enhancers	HUVEC	blood vessel
6	chr6:82574400-82576400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:82574600-82577600	Enhancers	Stomach Mucosa	stomach
8	chr6:82574800-82576200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:82574800-82576200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:82574800-82577000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:82575200-82575600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:82575200-82575600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:82575200-82575600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:82575200-82575600	Enhancers	Gastric	stomach
15	chr6:82575200-82575600	Enhancers	Ovary	ovary
16	chr6:82575200-82575600	Enhancers	Small Intestine	intestine
17	chr6:82575200-82576000	Enhancers	HSMM	muscle
18	chr6:82575200-82576200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:82575200-82576200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:82575200-82576200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:82575200-82576200	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr6:82575200-82576200	Enhancers	Hela-S3	cervix
23	chr6:82575200-82576200	Enhancers	NHLF	lung
24	chr6:82575200-82576400	Enhancers	NHDF-Ad	bronchial
25	chr6:82575200-82576400	Enhancers	Osteobl	bone
26	chr6:82575400-82575800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:82575400-82575800	Enhancers	Aorta	Aorta
28	chr6:82575400-82575800	Flanking Active TSS	NH-A	brain
29	chr6:82575400-82575800	Enhancers	NHEK	skin
30	chr6:82575400-82576200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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