Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82568233..82570114-chr6:82593375..82595093,2	MCF-7	breast:
2	chr6:82566803..82570893-chr6:82571199..82574802,4	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10455133	0.82[CEU][hapmap]
rs10455392	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs10455395	0.80[EUR][1000 genomes]
rs10455396	0.83[EUR][1000 genomes]
rs10484870	0.93[EUR][1000 genomes]
rs12190482	0.84[EUR][1000 genomes]
rs12192690	0.86[EUR][1000 genomes]
rs12194273	0.89[CEU][hapmap]
rs12196654	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs12201948	0.81[EUR][1000 genomes]
rs12203649	0.87[EUR][1000 genomes]
rs12210686	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12662590	0.89[EUR][1000 genomes]
rs1931621	0.85[CEU][hapmap]
rs194629	0.84[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs194630	0.84[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs194634	0.85[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap]
rs194636	0.81[CEU][hapmap]
rs3763244	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3812147	0.83[EUR][1000 genomes]
rs56710219	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6940643	0.86[EUR][1000 genomes]
rs926856	0.84[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82558200-82572000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:82565600-82569400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:82565600-82569600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:82565600-82572200	Weak transcription	HepG2	liver
5	chr6:82568000-82569400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:82568200-82569200	Enhancers	HSMMtube	muscle
7	chr6:82568200-82573000	Weak transcription	Stomach Mucosa	stomach
8	chr6:82568800-82572200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:82569000-82569200	Enhancers	Fetal Heart	heart
10	chr6:82569000-82570000	Enhancers	Aorta	Aorta
11	chr6:82569000-82570000	Enhancers	Ovary	ovary

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