Variant report

Variant	rs3763244
Chromosome Location	chr6:82555621-82555622
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM46A-2	chr6:82553501-82555626	XLOC_005774
2	lnc-FAM46A-2	chr6:82555093-82555626	XLOC_005774
3	lnc-FAM46A-2	chr6:82554902-82555626	XLOC_005774
4	lnc-FAM46A-2	chr6:82554490-82555626	NONHSAT113750
5	lnc-FAM46A-2	chr6:82555289-82555626	NONHSAT113753

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10455133	0.85[CEU][hapmap]
rs10455392	0.92[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10455395	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10455396	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10484870	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12190482	0.80[AMR][1000 genomes]
rs12192690	0.87[AMR][1000 genomes]
rs12194273	0.92[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs12196654	0.93[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12201948	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12203649	0.80[AMR][1000 genomes]
rs12210686	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12214571	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12662590	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1931621	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs194603	0.82[CEU][hapmap];0.86[JPT][hapmap]
rs194629	0.88[CEU][hapmap]
rs194630	0.88[CEU][hapmap]
rs194634	0.89[CEU][hapmap]
rs194635	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs194636	0.84[CEU][hapmap];0.82[CHB][hapmap]
rs3812147	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56710219	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6940643	0.87[AMR][1000 genomes]
rs915123	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs926856	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82549800-82556400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:82553200-82555800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:82553400-82559000	Weak transcription	Left Ventricle	heart
4	chr6:82553600-82556800	Weak transcription	HepG2	liver
5	chr6:82553600-82557000	Weak transcription	Stomach Mucosa	stomach
6	chr6:82553800-82556200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:82554400-82556200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:82554600-82556000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:82554800-82556000	Enhancers	Ovary	ovary
10	chr6:82555000-82555800	Enhancers	Primary hematopoietic stem cells	blood
11	chr6:82555400-82556000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:82555600-82567400	Weak transcription	Aorta	Aorta

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