Variant report

Variant	rs6940839
Chromosome Location	chr6:82575594-82575595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10455390	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10455391	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10455393	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10455394	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10455397	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10806230	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12190137	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12190230	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12192593	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12210484	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12211940	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12212024	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12212783	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12663436	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13193127	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1931636	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2050302	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2050303	0.92[CEU][hapmap];0.86[CHB][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6926755	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7341295	0.92[CEU][hapmap];0.86[CHB][hapmap]
rs7758707	0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs978238	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82572000-82576200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:82572200-82576000	Enhancers	HepG2	liver
3	chr6:82572800-82576000	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr6:82573400-82579200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:82573600-82576400	Enhancers	HUVEC	blood vessel
6	chr6:82574400-82576400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:82574600-82577600	Enhancers	Stomach Mucosa	stomach
8	chr6:82574800-82576200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:82574800-82576200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:82574800-82577000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:82575200-82575600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:82575200-82575600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:82575200-82575600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:82575200-82575600	Enhancers	Gastric	stomach
15	chr6:82575200-82575600	Enhancers	Ovary	ovary
16	chr6:82575200-82575600	Enhancers	Small Intestine	intestine
17	chr6:82575200-82576000	Enhancers	HSMM	muscle
18	chr6:82575200-82576200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:82575200-82576200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:82575200-82576200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:82575200-82576200	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr6:82575200-82576200	Enhancers	Hela-S3	cervix
23	chr6:82575200-82576200	Enhancers	NHLF	lung
24	chr6:82575200-82576400	Enhancers	NHDF-Ad	bronchial
25	chr6:82575200-82576400	Enhancers	Osteobl	bone
26	chr6:82575400-82575800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:82575400-82575800	Enhancers	Aorta	Aorta
28	chr6:82575400-82575800	Flanking Active TSS	NH-A	brain
29	chr6:82575400-82575800	Enhancers	NHEK	skin
30	chr6:82575400-82576200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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