Variant report

Variant	rs73413360
Chromosome Location	chr7:106721514-106721515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10249401	0.86[EUR][1000 genomes]
rs2299419	0.86[EUR][1000 genomes]
rs2707373	0.86[EUR][1000 genomes]
rs2707374	0.85[EUR][1000 genomes]
rs59103028	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73413342	0.83[EUR][1000 genomes]
rs73413372	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73413378	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv608072	chr7:106718347-106753248	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106717600-106722600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr7:106718000-106730600	Weak transcription	Fetal Brain Female	brain
3	chr7:106718800-106727800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:106719400-106723800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:106719400-106730400	Weak transcription	Fetal Brain Male	brain
6	chr7:106719400-106734200	Weak transcription	Brain Anterior Caudate	brain
7	chr7:106719800-106730600	Weak transcription	Brain Germinal Matrix	brain
8	chr7:106720000-106721800	Enhancers	HUVEC	blood vessel
9	chr7:106720200-106727000	Weak transcription	Pancreas	Pancrea
10	chr7:106720400-106721600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:106720400-106723800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:106720800-106722200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr7:106720800-106730600	Weak transcription	Lung	lung
14	chr7:106720800-106730800	Weak transcription	Fetal Stomach	stomach
15	chr7:106721000-106722200	Weak transcription	Spleen	Spleen
16	chr7:106721000-106730200	Weak transcription	Fetal Heart	heart
17	chr7:106721200-106722600	Genic enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links