Variant report

Variant	rs73413342
Chromosome Location	chr7:106706736-106706737
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:106704997..106706792-chr7:106715198..106717254,2	MCF-7	breast:
2	chr5:158681069..158681838-chr7:106706499..106707366,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12113322	0.87[ASN][1000 genomes]
rs17153745	0.87[ASN][1000 genomes]
rs56132452	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56266717	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60714435	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73413319	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73413321	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73413323	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73413330	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73413336	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73413360	0.83[EUR][1000 genomes]
rs73413372	0.81[EUR][1000 genomes]
rs7798500	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106686800-106707200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:106701000-106710000	Weak transcription	Right Ventricle	heart
3	chr7:106701600-106716000	Weak transcription	HUVEC	blood vessel
4	chr7:106703200-106708600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:106703800-106711400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr7:106704200-106707600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:106704600-106708800	Weak transcription	Fetal Kidney	kidney
8	chr7:106705200-106708400	Weak transcription	NHLF	lung
9	chr7:106706000-106706800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:106706200-106707800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr7:106706400-106707400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:106706400-106707600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:106706400-106707800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:106706400-106708600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:106706400-106708600	Weak transcription	Ovary	ovary
16	chr7:106706400-106709400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr7:106706400-106709800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr7:106706400-106710000	Weak transcription	Left Ventricle	heart
19	chr7:106706400-106710000	Weak transcription	Pancreas	Pancrea
20	chr7:106706400-106711800	Weak transcription	Brain Anterior Caudate	brain
21	chr7:106706400-106718600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr7:106706400-106720000	Weak transcription	Spleen	Spleen
23	chr7:106706600-106706800	Enhancers	Fetal Brain Male	brain
24	chr7:106706600-106707400	Weak transcription	K562	blood
25	chr7:106706600-106708600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr7:106706600-106708600	Weak transcription	Adipose Nuclei	Adipose
27	chr7:106706600-106708800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr7:106706600-106710000	Weak transcription	Fetal Heart	heart

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