Variant report

Variant	rs73413330
Chromosome Location	chr7:106681319-106681320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12113322	0.87[ASN][1000 genomes]
rs17153745	0.87[ASN][1000 genomes]
rs56132452	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56266717	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60714435	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73413319	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73413321	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73413323	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73413336	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73413342	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7798500	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106676400-106684400	Weak transcription	NHLF	lung
2	chr7:106677000-106684000	Weak transcription	Fetal Brain Male	brain
3	chr7:106677000-106684400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:106677000-106684600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:106678600-106684200	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:106679200-106681400	Weak transcription	Adipose Nuclei	Adipose
7	chr7:106679600-106681400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr7:106679600-106684400	Weak transcription	Fetal Stomach	stomach
9	chr7:106680000-106684400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr7:106680200-106681800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:106680200-106684400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr7:106680400-106684400	Weak transcription	HUVEC	blood vessel
13	chr7:106680600-106681600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:106681000-106681600	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr7:106681200-106682000	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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