Variant report

Variant	rs73413460
Chromosome Location	chr18:25418962-25418963
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56997426	0.84[EUR][1000 genomes]
rs58521287	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59245344	0.82[EUR][1000 genomes]
rs73413457	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73413461	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73945050	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1064665	chr18:25374753-25429234	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760473	chr18:25386088-25571466	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv909478	chr18:25392569-25478085	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv909479	chr18:25398940-25502001	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25412200-25421000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr18:25417800-25420000	Enhancers	NHEK	skin
3	chr18:25417800-25420400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr18:25417800-25420400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr18:25417800-25420400	Enhancers	HMEC	breast
6	chr18:25418000-25419800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr18:25418000-25420400	Enhancers	NH-A	brain
8	chr18:25418400-25419800	Enhancers	Osteobl	bone
9	chr18:25418400-25420000	Enhancers	A549	lung
10	chr18:25418400-25420600	Enhancers	HUVEC	blood vessel
11	chr18:25418600-25419000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr18:25418600-25419600	Enhancers	Hela-S3	cervix
13	chr18:25418600-25419800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr18:25418600-25419800	Enhancers	HSMM	muscle
15	chr18:25418600-25420200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr18:25418800-25419400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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