Variant report

Variant	rs73413984
Chromosome Location	chr9:15999716-15999717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs73411555	1.00[AMR][1000 genomes]
rs73413936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415808	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415878	1.00[AMR][1000 genomes]
rs73415882	1.00[AMR][1000 genomes]
rs73417860	1.00[AMR][1000 genomes]
rs73417890	1.00[AMR][1000 genomes]
rs73422762	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892637	chr9:15926508-16060746	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831521	chr9:15974174-16106565	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15999000-16001200	Enhancers	NHLF	lung
2	chr9:15999000-16001600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:15999000-16003200	Enhancers	NHDF-Ad	bronchial
4	chr9:15999000-16003600	Enhancers	HMEC	breast
5	chr9:15999200-16000000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:15999200-16001600	Enhancers	NHEK	skin
7	chr9:15999400-15999800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:15999400-15999800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:15999400-15999800	Flanking Active TSS	Osteobl	bone
10	chr9:15999400-16000200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr9:15999400-16000200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:15999400-16000200	Flanking Active TSS	NH-A	brain
13	chr9:15999400-16000400	Enhancers	HUVEC	blood vessel
14	chr9:15999400-16000600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:15999400-16000600	Enhancers	HSMM	muscle
16	chr9:15999400-16001600	Enhancers	Hela-S3	cervix
17	chr9:15999400-16002400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:15999400-16002400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:15999400-16002800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:15999600-15999800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:15999600-15999800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:15999600-16000000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr9:15999600-16000000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:15999600-16000000	Enhancers	A549	lung
25	chr9:15999600-16000200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr9:15999600-16000200	Enhancers	Placenta Amnion	Placenta Amnion
27	chr9:15999600-16000600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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