Variant report

Variant	rs73414139
Chromosome Location	chr6:33825551-33825552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs41271255	1.00[EUR][1000 genomes]
rs60263379	1.00[EUR][1000 genomes]
rs6933952	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73414141	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7754339	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885774	chr6:33778964-33840121	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv885775	chr6:33788055-33828178	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1032074	chr6:33795671-33835988	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1022403	chr6:33795671-33847345	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
6	nsv885776	chr6:33817929-33846143	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33805400-33833400	Weak transcription	Right Atrium	heart
2	chr6:33820200-33826600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:33820200-33826800	Weak transcription	HSMMtube	muscle
4	chr6:33822200-33826800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:33822400-33826000	Bivalent Enhancer	Fetal Thymus	thymus
6	chr6:33823000-33826200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr6:33823200-33829800	Enhancers	Spleen	Spleen
8	chr6:33823400-33825800	Enhancers	GM12878-XiMat	blood
9	chr6:33823400-33826000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
10	chr6:33823400-33826000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:33823400-33826000	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr6:33823400-33826200	Enhancers	Primary hematopoietic stem cells	blood
13	chr6:33823400-33826400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:33823400-33826600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr6:33823600-33825600	Weak transcription	Pancreas	Pancrea
16	chr6:33823600-33826000	Enhancers	Primary B cells from cord blood	blood
17	chr6:33824000-33826000	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:33824200-33828600	Enhancers	Fetal Muscle Leg	muscle
19	chr6:33824400-33826000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:33824400-33826200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr6:33824400-33828800	Weak transcription	Fetal Intestine Large	intestine
22	chr6:33824600-33826000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:33824600-33826000	Enhancers	HMEC	breast
24	chr6:33824600-33827000	Bivalent Enhancer	Fetal Stomach	stomach
25	chr6:33824600-33829800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
26	chr6:33824800-33825600	Enhancers	Placenta	Placenta
27	chr6:33824800-33825800	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr6:33824800-33826000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:33824800-33828800	Weak transcription	Fetal Intestine Small	intestine
30	chr6:33824800-33829400	Enhancers	Fetal Lung	lung
31	chr6:33825000-33825800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:33825000-33825800	Enhancers	Esophagus	oesophagus
33	chr6:33825000-33826000	Enhancers	Primary T cells from cord blood	blood
34	chr6:33825000-33826200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr6:33825000-33826200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:33825000-33826200	Enhancers	HSMM	muscle
37	chr6:33825000-33826400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:33825000-33826400	Enhancers	Osteobl	bone
39	chr6:33825000-33826800	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr6:33825200-33825800	Enhancers	NHLF	lung
41	chr6:33825200-33826000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:33825200-33826000	Enhancers	Adipose Nuclei	Adipose
43	chr6:33825200-33826200	Enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr6:33825200-33826200	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr6:33825200-33826200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:33825200-33826400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
47	chr6:33825200-33833000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
48	chr6:33825400-33825600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr6:33825400-33825600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:33825400-33825800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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