Variant report

Variant	rs6933952
Chromosome Location	chr6:33839527-33839528
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs34433163	1.00[ASN][1000 genomes]
rs60263379	1.00[EUR][1000 genomes]
rs73414139	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73414141	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7746977	1.00[ASN][1000 genomes]
rs7752152	1.00[CEU][hapmap]
rs7754339	1.00[EUR][1000 genomes]
rs9469621	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885774	chr6:33778964-33840121	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1022403	chr6:33795671-33847345	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
4	nsv885776	chr6:33817929-33846143	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33836200-33842600	Weak transcription	Fetal Lung	lung
2	chr6:33836400-33841000	Weak transcription	Fetal Kidney	kidney
3	chr6:33836800-33840800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:33837600-33841000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:33838000-33839600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:33838200-33839600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:33838200-33839800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:33838600-33839600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr6:33838600-33839600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:33839000-33848800	Weak transcription	Spleen	Spleen
11	chr6:33839200-33840000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:33839200-33840200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:33839200-33841400	Enhancers	Fetal Thymus	thymus
14	chr6:33839400-33839600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:33839400-33839600	Enhancers	Fetal Intestine Small	intestine
16	chr6:33839400-33840000	Enhancers	H9 Cell Line	embryonic stem cell
17	chr6:33839400-33840000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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