Variant report

Variant	rs7746977
Chromosome Location	chr6:33842481-33842482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16869660	0.81[EUR][1000 genomes]
rs34433163	1.00[ASN][1000 genomes]
rs6918090	0.81[EUR][1000 genomes]
rs6926599	0.81[EUR][1000 genomes]
rs6930960	0.81[EUR][1000 genomes]
rs6933952	1.00[ASN][1000 genomes]
rs73418515	0.81[EUR][1000 genomes]
rs744686	0.81[YRI][hapmap];0.81[EUR][1000 genomes]
rs744687	0.81[EUR][1000 genomes]
rs744688	0.81[YRI][hapmap];0.81[EUR][1000 genomes]
rs7748471	0.81[EUR][1000 genomes]
rs7748483	0.81[YRI][hapmap];0.81[EUR][1000 genomes]
rs7767294	0.81[EUR][1000 genomes]
rs7767496	0.81[EUR][1000 genomes]
rs9469621	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022403	chr6:33795671-33847345	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
3	nsv885776	chr6:33817929-33846143	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33836200-33842600	Weak transcription	Fetal Lung	lung
2	chr6:33839000-33848800	Weak transcription	Spleen	Spleen
3	chr6:33840000-33843200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:33840000-33844200	Enhancers	Fetal Intestine Large	intestine
5	chr6:33840800-33848000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:33841000-33845800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:33841600-33842800	Weak transcription	Fetal Kidney	kidney
8	chr6:33842000-33843600	Enhancers	Fetal Brain Male	brain
9	chr6:33842000-33844200	Enhancers	Fetal Thymus	thymus
10	chr6:33842200-33842600	Weak transcription	Fetal Intestine Small	intestine
11	chr6:33842200-33843200	Weak transcription	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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